Corals, contaminants, and climate change

Bleaching. This complicated and foreboding term now lurks around every conversation about coral reefs. Impacted heavily by climate change and associated warming oceans, coral reefs experience bleaching when the algae that live in their tissues and contribute vitally to their growth are expelled, causing the corals to lose their color, and possibly their lives.

Closely related to anemones and jellyfish, corals can obtain algae from the environment and put them in their tissues. “Corals live like a little diaphanous greenhouse, where the algae are safe and consume the waste products from coral. In exchange, the algae give oxygen, sugars, and other nutrients back to the coral animal,” Callum Backstrom, a PhD student at SAFS, describes. The mutualism between coral and algae allows corals, otherwise diminutive, gelatinous animals, to make the massive, multi-ton skeletal structures composing reefs. Home to about 25% of all marine life and hosting up to half of all marine fish at some point in their life cycle, coral reefs are incredibly important for humans too, reducing up to 85% of wave height and storm energy on the coastlines they border.

A person is pictured diving underwater to view a coral reef, wearing a snorkeling mask.
Mike McCollough
Callum dives to collect corals in Kahekili Beach Park, Maui, to assess the extent of heavy metal contamination from the Lahaina Fires of 2023. He uses a titanium axe and rubber mallet to break and remove coral fragments for metal toxicology analysis. Collection under permit of the Department of Land and Natural Resources, Hawaiʻi.

A member of Jacqueline Padilla-Gamiño’s lab group, Callum is interested in the resilience of certain corals to bleaching. “I’m asking questions like why are some corals more resilient? And for the ones that do survive, how could coral reproduction be compromised after a bleaching event?” Callum shared. A primary cause of bleaching is ocean warming, which causes the algae to go into “overdrive,” producing toxic forms of oxygen that in turn stress the coral into expelling their primary food source. Bleached corals may resorb their reproductive cells for nutrition and otherwise forego reproduction altogether to survive starvation until they can regain their photosynthetic algae.

Callum stands hip-deep in water, with corals visible on the shallow seafloor in front of him. In the background, the coastline with palm trees is visible.
Katherine Lasdin
The Padilla-Gamiño lab has been growing coral colonies in Kāneʻohe Bay for almost a decade, providing a diverse pool of corals to use for experiments and to measure growth rates over time. Here, Callum is inspecting the lab’s coral racks, including colonies that he is monitoring to determine for the first time whether male and female corals grow and respond to bleaching events differently.

More resilient corals that resist bleaching may contain strains of heat-tolerant algae, but, as Callum explains, there are issues associated with this: “When oceans are cooler and times are good, these resilient types of algae are not generally the best partners for the coral. They aren’t as efficient, or don’t provide as much energy to the coral as less resilient algal strains and therefore can cause the coral to be outcompeted by other coral colonies in their environment.” Another way that more resilient corals combat bleaching is by increasing their rate of feeding on zooplankton and detritus from the water column; however, more feeding could mean these corals are prone to consume more pollutants, such as microplastics and heavy metals, in the marine environment.

The effects of these pollutants are a specific area of interest for Callum: do bleached corals accumulate more pollutants from a less photosynthetic, more feeding-driven diet, and could these acquired pollutants damage the health or reproductive success of bleached corals well after recovery of their symbiotic algae?

Some pollutants, like microplastics, are synthetically produced by humans and therefore have a clear origin as environmental contaminants. One difficulty faced when asking questions about elemental contaminants like metals is that many metals are used in low concentrations as essential trace nutrients for healthy coral function. But most studies on this topic focus on vertebrates, and very little is known about contaminants in organisms without a backbone, such as corals. “So, a key piece of this puzzle is to find out what the normal concentrations are for corals, what kind of contaminants are building up and at what level, and is this happening when they’re stressed and eating more?” Callum said.

Callum over a large blue tub which holds water and a number of corals. He is holding a coral in both of his hands while smiling into the camera. Other blue tubs can be seen behind him.
Jacqueline Padilla-Gamiño
Callum displays a live colony of rice coral (Montipora capitata) at the Hawaiʻi Institute of Marine Biology in Kāneʻohe Bay, Hawaiʻi. By collecting the egg-sperm bundles released by these hermaphroditic coral colonies on nights around the new moon in the summer months, Callum can compare the metal toxicology of the corals’ egg and sperm cells, and of the algae cells packed into the eggs, to the metal levels of the adult parent and its algal cells.

The breakdown in the symbiosis between corals and their algae helps to answer this question. Callum has extensively studied the mutualistic exchange of resources between corals and their algae – last year, he published his work investigating the role of photosynthesis in mesophotic corals from deep, almost pitch-black depths of the ocean in the Proceedings of the Royal Society.

Two small corals side by side on top of a blue tub - the one of the left is a brown color, and the one on the right is bleached white.
Callum Backstrom
In controlled experiments in onshore tanks with waterflow from the reef, Callum simulates bleaching events on clonal fragments of coral colonies to monitor how trace metal nutrients are exchanged and lost during the bleaching process. A healthy clone with its brown algal symbionts is shown on the left, while a bleached clonal fragment (white) is shown on the right for comparison. In some experiments, Callum further compares how bleached fragments change their feeding rates and preferences for microplastic pollutants relative to healthy fragments.

This gave him a basis to hypothesize about how bleaching events can show us what is essential to that mutualism. “When a coral undergoes a bleaching event and dumps out all its algae, when it gets them back, the metals found in the newer algal cells could be the ones important for normal cell function, as opposed to lifelong contaminants. I have found that algal cells packed inside coral eggs prior to reproduction have different, often lower metal concentrations than those in the adult coral, which could corroborate a baseline level of “healthy,” essential trace levels of these metals. Everything else above these baselines, or that does not get transferred to the offspring, then has a much more compelling basis to be called a contaminant,” Callum explains. An example of an elevated metal that Callum has seen in the eggs of coral is arsenic. Used in herbicides in Hawaii’s agriculture, atomic pollutants such as arsenic don’t degrade, meaning arsenic released into the environment 100 years ago remains in the system. “And now we might be seeing it work its way through corals and other marine organisms,” Callum shares.

To study these issues, Callum conducts his fieldwork at the Hawaiʻi Institute of Marine Biology on Moku O Loʻe (Coconut Island), off Oʻahu. There, for projects spanning the last three years, Callum has collected and grown corals on the reef, stained corals to track their growth rates, and even brought them to large tanks on the shoreline for months at a time to simulate bleaching events, run feeding experiments, and collect coral eggs and sperm during spawning events. His work in the summer of 2024 investigating the effects of the Lahaina fires of summer 2023 on corals in Maui concluded various studies of the bioaccumulation of metals and microplastics in corals, which will serve as the foundation of his PhD dissertation.

Three people stand in the water, holding snorkeling gear, with blue skies and white fluffy clouds visible in the background.
Allyson L.T. Ijima.
Callum with members of the University of Hawai’i’s coral collection team in west Maui, undergraduate Jasmine Alip (l) and Ph.D. student Justin Berg (r).

Callum hopes that his work studying bleaching and pollution events in coral reefs will help us understand and predict the needs of corals into the future. More immediately, his pollution-oriented research will help isolate specific metals to be targeted by remediation efforts across Oʻahu and Maui, especially in the wake of the Lahaina fires. For example, certain plants like Chinese Brake Fern could be integrated into coastal zones to remove arsenic from contaminated soils that is leaching into Hawaiian reefs. However, by characterizing the exchange of trace metal nutrients between corals and their symbiotic algae, and the breakdown of this exchange during bleaching, Callum can further identify metals that could help boost coral resilience. Emerging studies are testing the potential for trace metal seeding to boost thermal resilience in marine algal populations; Callum believes his work can help these applications expand to corals as well.

In addition to various SAFS course guest lectures and department symposia, Callum has been featured as a speaker at the International Coral Reef Symposium in Bremen, Germany in 2022, the Western Society of Naturalists in Monterey Bay, CA, and at a microplastics research workshop at the Seattle Aquarium, both in 2023. For his talk describing his heavy metals research at the annual meeting of the Society of Integrative and Comparative Biology in Seattle in 2024, he earned the Mary Rice Award for Best Student Presentation. Callum mentors six undergraduate students across various departments, who have been instrumental in his research toward his PhD dissertation. He also leads weekly lab meetings with his undergraduate research students to discuss topical papers and/or share experiences and ideas related to their work as a team. These meetings have also provided opportunities for feedback among coral team students as they communicate their findings across venues throughout the college, such as undergraduate research symposia. This year, Callum has been recognized as one of the Husky 100 for his PhD research and undergraduate mentorship at the UW.

Most days, you can find Callum tinkering with corals in the Fishery Sciences Building or preparing live-organism demonstrations in the class laboratories of the Fisheries Teaching & Research Building. You can catch him and his undergraduate team displaying live invertebrates and plastic pollution-catching devices at the upcoming Aquatic Sciences Open House on 17 May!

Callum stands smiling into the camera for his Husky 100 portrait.
University of Washington
Congratulations to Callum Backstrom, one of UW’s 2025 Husky 100.

New molecular tools for reef conservation and climate resilience

New research has revealed that certain protein particles distinguish resilient corals from those that succumb to bleaching, offering new molecular tools for reef conservation and climate resilience. “Some corals are very resilient and very robust. To improve reef restoration efforts, we performed studies to determine how to identify and select resilient coral for propagation purposes and to assure they would have offspring,” said Brook L. Nunn, research associate professor in the Department of Genome Sciences at the University of Washington School of Medicine.

Part of the research team was SAFS Associate Professor, Jacqueline Padilla-Gamiño. “The work provides a blueprint for identifying corals most likely to survive future bleaching events, offering critical insights to predict and enhance reef resilience in a rapidly warming world,” she said.

Read the full story published by UW Medicine

 


Small but mighty: studying cryptobenthic fishes on Tonga’s reefs

Swimming around tropical coral reefs in a colorful array are an ever-changing multitude of fishes, some in schools of hundreds, others in pairs, and ones that prefer their own company. These are the fishes divers see on a heathy coral reef, but they are often only half of the diversity found in the reef’s fishes. The “hidden half” are the cryptobenthic fishes. So-called for their habit of camouflaging and hiding away in reefs and on the seafloor, cryptobenthic fishes, such as gobies, blennies, and cardinalfishes, are a fundamental part of thriving coral reef ecosystems around the globe. The gobies in this group are the focus of Marta Gómez-Buckley’s PhD research at SAFS.

A person wearing scuba diving gear is pictured underwater holding a clear jar with a white lid, close to the seabed, with corals visible in the background.
Ray Buckley
Cryptobenthic fishes collected from Afo Island, in Vava’u, Tonga. The number on the jar helps keep track of the specific sampling station where the specimens were collected.

“Cryptobenthic fishes are very small and are normally overlooked whenever surveys are done on coral reefs,” Marta shared. And most are so small that you could fit hundreds in your hands. “These fishes are often only as big as 2cm when adults, so they’re extremely tiny compared to most fishes, but they play a big role as a prey resource. In the first chapter of my dissertation, I investigated new techniques to collect such small specimens.” Marta is conducting her work in the Vava’u Archipelago, Kingdom of Tonga, a collection 41 islands in the more than 170 islands in the Tongan Group in Polynesia. Marta studied and collected cryptobenthic reef fishes in several areas around Vava’u which is the northern-most island group in Tonga.

Working with her advisor, Luke Tornabene in the Fish Systematics and Biodiversity Lab, Marta collects her samples – both fishes and water for environmental DNA (eDNA) – from the seafloor and coral heads when on her research trips. Marta has now visited Tonga four times, building on work she started in the region prior to joining SAFS. Re-entering academia after being a high school teacher for eight years, Marta completed her master’s at SAFS in 2000.

Part of the impetus for Marta’s work in Tonga is collecting specimens for the UW/Burke Museum’s Fish Collection, one of the largest collections of its kind in the world. “I saw so many fishes when diving in these coral reef areas. I have made now four trips to Tonga, and one to American Samoa. While on these trips, I was able to collect a lot of fish species never housed in the Fish Collection.” Home to more than 12 million preserved fish specimens from around the globe, the Fish Collection is a critical resource for some of the research of SAFS scientists, students and other researchers in the broader community in the fields of genetics, fish biology, taxonomy, and parasite ecology, to name a few. It is also a very popular destination for outreach education, with Fish Collection tours being hosted throughout the year for UW students and members of the wider community.

During the 2019 fieldwork in Tonga, which was partially supported by the Hall Conservation Genetics Research Fund from the College of the Environment, Marta collected samples underwater using two different techniques. “I wanted to see if I could detect the same number species (or maybe more) from water samples (eDNA) collected within the interstices of live coral or coral rubble and compare the results with the physically collected specimens in those same habitats.” The result was that physically collecting the fishes is by far the best method, as documented by Marta in a publication in Coral Reefs in 2023.  “One of the unexpected things I noticed is that even in and around a dead coral rock full of crevices, there is so much life hiding away, especially cryptobenthic fishes. From one of these ‘dead coral’ rocks the size of a football, I collected 100 ’cryptos’ of several different species!” Marta shared.

How many species comprise the populations of a specific cryptobenthic reef fish that is found around Tonga’s coral reefs and other Indo-Pacific locations? “This is the main question in Chapter 2 of my dissertation,” Marta shared. “We know in the specific genus I’m looking at – the Eviota there are 132 described species so far. This is a highly diverse genus.” Marta looked specifically into the shortest-lived fish (and vertebrate), the Eviota sigillata, also known as the adorned dwarfgoby, which has a lifespan of 59 days. “They are reproducing fast and evolving rapidly because of this short lifespan. These fishes spend about half of their lives or more in the planktonic stage before recruiting back to their settling reef and starting to reproduce. To me, this is an incredible ‘life circus’ act!” Marta added.

After doing in depth morphological and genetic analyses of the specimens available at the Burke Museum from previous collections, specimens borrowed from other museums around the world, and her own collections in Tonga, the conclusion of her Chapter 2 is that there are at least seven undescribed species within the adorned dwarfgobies clade. The other approximately 20 clades within the genus have many species waiting to be formally confirmed using similar genome-wide techniques as Marta has pioneered in her Chapter 2. “We suspect that the number of species for this genus may double the ones described so far. We are going to need a lot of new taxonomists to work on these descriptions!”

A woman takes a photo of tiny fishes set up in front of her on a small brown table.
Luke Tornabene
Photographing cryptos after a dive. Using a macro-lens and fish photo-box.

In her Chapter 3, Marta is taking this work a step further to look at the whole Eviota phylogenetic tree. “The easy part of my research is the field work, even with the exhausting long hours spent underwater and then the processing and photographing of each specimen collected each day. The hardest, longest part is the time spent back at the lab using a microscope and a camera to measure and record morphological features, preparing genetic material for DNA sequencing, and the complex bioinformatic analysis of the data that requires the use of the UW high performance computer system. One of the main questions I answer in my third chapter using genome-wide data is to determine if all the Eviota species groups share a close common ancestor, or if they must be split into different genera. To answer this question, I must look for genetic clues in about 200 specimens that are part of the described Eviota, and include other related species that are also gobies, to use as a frame of reference,” Marta shared.

Using specific genome-wide techniques and comparing specific morphological features across these 200 tiny specimens, Marta hopes to answer this question. “I get asked many times why it is important to know how many and what species are part of a particular ecosystem, and why unveiling the hidden diversity of cryptobenthic reef fishes is important. My answer is, how can you study relevant ecological questions about coral reef ecosystems if you don’t know about half of the fish species that inhabit them?”

Marta is finishing her PhD this summer and she is the proud recipient of a 2024 SAFS Faculty Merit Award for the SAFS PhD program. Marta plans to continue working on cryptobenthic reef fishes after her PhD completion. She wants to complete taxonomic descriptions of new undescribed species she collected from Tonga. In 2025, Marta plans to return to Tonga where she will again be diving alongside her husband, SAFS Affiliate Faculty Ray Buckley, collecting more ‘cryptos’, and working with local community groups and NGOs.

What is another student in Luke Tornabene’s lab working on? Find out